Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs7192861 chr16:77758486 G/T 8.27E-5 119 42.82 29.95 28.43 KM Plot
THYM rs7194582 chr16:77758627 C/G 0.000102 117 45.87 27.2 28.43 KM Plot
THYM rs7194625 chr16:77758686 C/T 0.000102 117 45.87 27.2 28.43 KM Plot
THYM rs71994518 chr2:30787337 ACT/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs7200134 chr16:77758630 T/C 0.000102 117 45.87 27.2 28.43 KM Plot
THYM rs72007741 chr6:163043152 CACTTT/C 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs7204288 chr16:24784531 A/G 3.37E-6 119 48 30.03 31.37 KM Plot
THYM rs7207700 chr17:12816371 C/G 9.52E-7 117 40.3 40.67 14.62 KM Plot
THYM rs7207847 chr17:12816330 G/A 9.52E-7 117 40.3 40.67 14.62 KM Plot
THYM rs7217037 chr17:38223191 A/G 0.000233 119 36.73 34.87 50.3 KM Plot
THYM rs72255304 chr4:187178141 GTC/G 1.49E-8 118 12.63 41.77 41.7 KM Plot
THYM rs72267162 chr7:29675613 TTAGATAGATAA/T 3.95E-13 119 38.13 46.27 6 KM Plot
THYM rs724263 chr14:78321874 G/T 1.23E-5 119 22.5 50.1 37.63 KM Plot
THYM rs72501230 chr4:70044505 C/T 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs72501231 chr4:70056176 A/C 7.82E-13 117 39.75 42.3 6 KM Plot